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  1. Moonlight2R::cscape_somatic_output
    Cscape-somatic annotations of TCGA-LUAD
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|645 x 7
  2. Moonlight2R::DAPsmatrix
    Differentially abundant proteins
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4873 x 4
  3. Moonlight2R::dataDMA
    Output example from the function Driver Mutation Analysis
    json| rda| rds
    list
  4. Moonlight2R::dataFEA
    Functional enrichment analysis with ORA method
    csv| xlsx| json| ndjson| rda| rds
    data.frame|101 x 7
  5. Moonlight2R::dataFEA_fgsea
    Functional enrichment analysis with fgsea method
    csv| xlsx| json| ndjson| rda| rds
    data.frame|101 x 9
  6. Moonlight2R::dataFilt
    Gene expression data from TCGA-LUAD
    csv| json| rda| rds
    matrix|3000 x 20
  7. Moonlight2R::dataGLS
    Literature search of driver genes
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|13 x 8
  8. Moonlight2R::dataGMA
    Output example from GMA function
    csv| json| rda| rds
    list
  9. Moonlight2R::dataGRN
    Gene regulatory network
    json| rda| rds
    list
  10. Moonlight2R::dataGRN_no_noise
    Gene regulatory network
    json| rda| rds
    list
  11. Moonlight2R::dataMAF
    Mutation data from TCGA LUAD
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 141
  12. Moonlight2R::dataMAVISp
    MAVISp dataset example
    json| rda| rds
    list
  13. Moonlight2R::dataMethyl
    Methylation data matrix from TCGA-LUAD project
    csv| json| rda| rds
    matrix|73 x 27
  14. Moonlight2R::dataPRA
    Output example from function Pattern Recognition Analysis
    json| rda| rds
    list
  15. Moonlight2R::dataURA
    Upstream regulator analysis
    csv| json| rda| rds
    matrix|20 x 2
  16. Moonlight2R::dataURA_plot
    Upstream regulator analysis
    csv| json| rda| rds
    matrix|12 x 2
  17. Moonlight2R::DEG_Methylation_Annotations
    Output example from GMA function
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|3435 x 35
  18. Moonlight2R::DEG_Mutations_Annotations
    Differentially expressed genes's Mutations
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|3561 x 173
  19. Moonlight2R::DEGsmatrix
    Differentially expressed genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3390 x 5
  20. Moonlight2R::DiseaseList
    Cancer-related biological processes
    csv| json| rda| rds
    list
  21. Moonlight2R::EAGenes
    Information about genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20038 x 5
  22. Moonlight2R::EncodePromoters
    Promoters
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|84738 x 6
  23. Moonlight2R::EpiMix_Results_Regular
    Output example from GMA function
    json| rda| rds
    list
  24. Moonlight2R::GEO_TCGAtab
    Information on GEO and TCGA data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 12
  25. Moonlight2R::knownDriverGenes
    Information of known cancer driver genes from COSMIC
    json| rda| rds
    list
  26. Moonlight2R::listMoonlight
    List of oncogenic mediators of 5 TCGA cancer types
    json| rda| rds
    list
  27. Moonlight2R::LOC_protein
    Level of Consequence: Protein
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 7
  28. Moonlight2R::LOC_transcription
    Level of Consequence: Transcription
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 7
  29. Moonlight2R::LOC_translation
    Level of Consequence: Translation
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 7
  30. Moonlight2R::LUAD_sample_anno
    Sample annotations of TCGA-LUAD project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23 x 2
  31. Moonlight2R::MetEvidenceDriver
    Methylation evidence table to define driver genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 6
  32. Moonlight2R::NCG
    Network of Cancer Genes 7.0
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|3347 x 7
  33. Moonlight2R::Oncogenic_mediators_methylation_summary
    Output example from GMA function
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|25 x 7
  34. Moonlight2R::Oncogenic_mediators_mutation_summary
    Oncogenic Mediators Mutation Summary
    csv| xlsx| json| ndjson| rda| rds
    grouped_df|12 x 15
  35. Moonlight2R::tabGrowBlock
    Information of growing/blocking characteristics of 101 biological processes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|101 x 3
  36. MoonlightR::dataFilt
    Gene Expression (Rnaseqv2) data from TCGA LUAD
    csv| json| rda| rds
    matrix|13742 x 20
  37. MoonlightR::dataGRN
    GRN gene regulatory network output
    json| rda| rds
    list
  38. MoonlightR::dataURA
    Output example from function Upstram Regulator Analysis
    csv| json| rda| rds
    matrix|100 x 2
  39. MoonlightR::DEGsmatrix
    DEG Differentially expressed genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3390 x 5
  40. MoonlightR::DiseaseList
    Information on 101 biological processes
    csv| json| rda| rds
    list
  41. MoonlightR::EAGenes
    Information about genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20038 x 5
  42. MoonlightR::GDCprojects
    Information on GDC projects
    json| rda| rds
    character
  43. MoonlightR::geneInfo
    Information about genes for normalization
    csv| json| rda| rds
    matrix|20531 x 3
  44. MoonlightR::GEO_TCGAtab
    Information on GEO data (and overlap with TCGA)#' A data set containing the following data:
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 12
  45. MoonlightR::knownDriverGenes
    Information on known cancer driver gene from COSMIC
    json| rda| rds
    list
  46. MoonlightR::listMoonlight
    Output list from Moonlight
    json| rda| rds
    list
  47. MoonlightR::tabGrowBlock
    Information growing/blocking characteristics for 101 selected biological processes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|101 x 3